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• ABySS
  ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful fo
  2 KB (315 words) - 16:17, 19 August 2022
• MarginPolish
  ...is also part of an assembly pipeline which includes an ultrafast nanopore assembler Shasta and a multi-task RNN polisher HELEN. HELEN operates on images genera
  3 KB (320 words) - 21:22, 6 December 2019
• DISCOVAR de novo
  DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimi
  3 KB (326 words) - 14:41, 15 August 2022
• AMOS
  ...resents our primary goal -- to produce A Modular, Open-Source whole genome assembler. Open-source so that everyone is welcome to contribute and help build outst
  3 KB (344 words) - 12:41, 12 August 2022
• MaSuRCA
  Zimin, A. et al. The MaSuRCA genome Assembler. Bioinformatics (2013). doi:10.1093/bioinformatics/btt476
  3 KB (340 words) - 18:24, 18 August 2022
• SHARCGS
  SHort-read Assembler based on Robust Contig-extension for Genomic Sequencing.
  3 KB (313 words) - 22:42, 21 August 2022
• Bridger
  Bridger is an efficient ''de novo'' transcriptome assembler for RNA-Seq data. It expects as input RNA-Seq reads (single or paired) in f
  3 KB (341 words) - 13:14, 15 August 2022
• Hapsembler
  Nilgun Donmez and Michael Brudno (2011) Hapsembler: an assembler for highly polymorphic genomes. In Proceedings of the 15th Annual internati
  3 KB (332 words) - 18:15, 15 August 2022
• IDBA-UD
  IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth. It is
  3 KB (354 words) - 18:40, 15 August 2022
• TriMetAss
  .... It uses Vmatch [2] to extend seed reads (or contigs generated by another assembler) into longer contigs, by iteratively calling Vmatch and Trinity, until some
  3 KB (344 words) - 20:52, 12 August 2022
• Canu
  Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII
  3 KB (358 words) - 14:26, 14 April 2020
• ABruijn
  ABruijn is a ''de novo'' assembler for PacBio and Oxford Nanopore Technologies reads. The algorithm uses an A-
  3 KB (354 words) - 20:09, 24 August 2022
• BinPacker
  BinPacker is an efficient de novo trascriptome assembler for RNA-Seq data. It can assemble all transcripts from short reads (single
  3 KB (365 words) - 12:53, 15 August 2022
• SRAssembler
  SRAssembler (Selective Recursive local Assembler) is a modular pipeline program that can assemble genomic DNA reads into con
  3 KB (381 words) - 15:33, 27 May 2022
• Xander
  Xander Gene-targeted Metagenomic Assembler
  3 KB (381 words) - 19:07, 10 June 2022
• MEGAHIT
  MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of
  3 KB (367 words) - 18:31, 18 August 2022
• MOSAIK
  MOSAIK is a reference-guided assembler comprising of four main modular programs:
  3 KB (414 words) - 11:59, 19 August 2022
• GRIDSS
  ...tection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRI
  3 KB (388 words) - 21:20, 6 December 2019
• Wengan
  Wengan is a new genome assembler that, unlike most of the current long-reads assemblers, avoids
  4 KB (472 words) - 20:55, 12 August 2022

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