Search results

• Chewbbaca
  chewBBACA “BSR-Based Allele Calling Algorithm” is a comprehensive pipeline including a set of functions for the creation and validation of whole genom
  3 KB (346 words) - 15:58, 20 October 2023
• VirusDetect
  ...z D, Fuentes S, Ling K-S, Kreuze J, Fei Z (2017) VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs.]
  3 KB (377 words) - 23:22, 30 July 2020
• BiG-SCAPE
  ...ategory:Phylogenetics]][[Category:Biology]][[Category:Genomics]][[Category:Pipeline]]
  3 KB (377 words) - 12:53, 15 August 2022
• Blast2GO
  The Blast2GO Pipeline Version (B2G4Pipe) runs Blast2GO without graphical interface. The pipeline accepts BLAST and InterProScan results and parses
  6 KB (920 words) - 14:08, 16 March 2023
• Haphpipe
  HAplotype and PHylodynamics pipeline for viral assembly, population genetics, and phylodynamics.
  3 KB (405 words) - 16:40, 14 March 2023
• SNAP
  SNAP is a program that is part of a gene sequencing pipeline. It takes data from gene sequencing hardware that consists of short chunks
  3 KB (372 words) - 20:42, 12 August 2022
• SRAssembler
  SRAssembler (Selective Recursive local Assembler) is a modular pipeline program that can assemble genomic DNA reads into contigs that are homologou
  3 KB (381 words) - 15:33, 27 May 2022
• Deepvariant
  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generati
  3 KB (356 words) - 13:17, 16 April 2024
• Wgs
  ...rge in 2004 as the wgs-assembler under the GNU General Public License. The pipeline revised for 454 data was named CABOG (Miller 2008).
  3 KB (375 words) - 20:55, 12 August 2022
• PerM
  ...ormat and that output can be further processed by ComB, SAMtools, RseqFlow pipeline and the [[Galaxy]]. Check the [http://code.google.com/p/perm/wiki/Manual ma
  3 KB (396 words) - 17:40, 21 August 2022
• Themisto
  ...Epidemiology with Mixed Samples. Supplement: Pseudoalignment in the mGEMS pipeline.
  3 KB (401 words) - 20:57, 3 June 2022
• MetaWRAP
  ...efull in your research, please cite the publication: MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis. If certain software wrapped
  3 KB (412 words) - 22:31, 8 September 2020
• Circos
  ...corporated into data acquisition, analysis and reporting pipelines (a data pipeline is a multi-step process in which data is analyzed by multiple and typically
  3 KB (409 words) - 13:35, 15 August 2022
• Maker
  MAKER is a portable and easily configurable genome annotation pipeline. It's purpose is to allow smaller eukaryotic and prokaryotic genome project
  3 KB (387 words) - 18:20, 18 August 2022
• GRIDSS
  ...t is hoped that GRIDSS can serve as an exemplar modular structural variant pipeline designed for interoperability with other tools.
  3 KB (388 words) - 21:20, 6 December 2019
• ARC
  ARC is a pipeline which facilitates iterative, reference guided ''de novo'' assemblies with t
  3 KB (430 words) - 14:32, 12 August 2022
• YAGO
  This is the pipeline to run YAGO 4. It allows to build YAGO 4 from a Wikidata dump.
  4 KB (480 words) - 17:13, 15 December 2022
• Amrfinderplus
  ...mbled nucleotide sequence. AMRFinderPlus is used in the Pathogen Detection pipeline, and these data are displayed in NCBI’s Isolate Browser. AMRFinderPlus re
  4 KB (447 words) - 15:59, 27 May 2022
• EDTA
  ...le Element Annotation Methods for Creation of a Streamlined, Comprehensive Pipeline. Genome Biol. 20(1): 275.]
  4 KB (474 words) - 21:27, 14 September 2023
• Sickle
  ...ion is close. Illumina quality refers to qualities encoded with the CASAVA pipeline between versions 1.3 and 1.7. Illumina quality using CASAVA >= 1.8 is Sange
  4 KB (551 words) - 22:56, 21 August 2022

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