Search results

• Meraculous
  ...mble human-sized genomes on commodity clusters in under a day. The process pipeline implements a highly transparent and portable model of job control and monit
  3 KB (354 words) - 18:36, 10 June 2022
• Rapidsai
  ...at integrates with a variety of machine learning algorithms for end-to-end pipeline accelerations without paying typical serialization costs. RAPIDS also inclu
  3 KB (348 words) - 21:29, 21 August 2022
• READemption
  READemption is a pipeline for the computational evaluation of RNA-Seq data. It was originally develop
  3 KB (352 words) - 17:58, 1 June 2022
• Nipype
  existing pipeline systems.
  3 KB (348 words) - 20:07, 12 August 2022
• Humann2
  HUMAnN 2.0 is a pipeline for efficiently and accurately profiling the presence/absence and abundance
  3 KB (348 words) - 22:26, 27 August 2020
• Aquamis
  AQUAMIS is a pipeline for routine assembly and quality assessment of microbial isolate sequencing
  3 KB (348 words) - 22:07, 20 October 2023
• PanX
  ...n-genome analysis, interactive visualization and exploration. The analysis pipeline is based on DIAMOND (Buchfink et al. 2015 Nature Methods), MCL and phylogen
  3 KB (346 words) - 21:22, 6 December 2019
• Biolite
  * A modular 'pipeline' framework with Python wrappers and workflows for commonly used NGS tools,
  3 KB (362 words) - 12:54, 15 August 2022
• RDnaTools
  ...ily the Mothur suite of utilities. Currently rDnaTools implements a single pipeline for the export, filtering, and cluster of 16S sequences.
  3 KB (361 words) - 21:24, 6 December 2019
• Mantis
  ...m needs a tumor BAM and a matched normal BAM file (produced using the same pipeline) to determine the instability score between the two samples within the pair
  3 KB (368 words) - 17:20, 27 May 2022
• Chewbbaca
  chewBBACA “BSR-Based Allele Calling Algorithm” is a comprehensive pipeline including a set of functions for the creation and validation of whole genom
  3 KB (346 words) - 15:58, 20 October 2023
• VirusDetect
  ...z D, Fuentes S, Ling K-S, Kreuze J, Fei Z (2017) VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs.]
  3 KB (377 words) - 23:22, 30 July 2020
• BiG-SCAPE
  ...ategory:Phylogenetics]][[Category:Biology]][[Category:Genomics]][[Category:Pipeline]]
  3 KB (377 words) - 12:53, 15 August 2022
• Blast2GO
  The Blast2GO Pipeline Version (B2G4Pipe) runs Blast2GO without graphical interface. The pipeline accepts BLAST and InterProScan results and parses
  6 KB (920 words) - 14:08, 16 March 2023
• Haphpipe
  HAplotype and PHylodynamics pipeline for viral assembly, population genetics, and phylodynamics.
  3 KB (405 words) - 16:40, 14 March 2023
• SNAP
  SNAP is a program that is part of a gene sequencing pipeline. It takes data from gene sequencing hardware that consists of short chunks
  3 KB (372 words) - 20:42, 12 August 2022
• SRAssembler
  SRAssembler (Selective Recursive local Assembler) is a modular pipeline program that can assemble genomic DNA reads into contigs that are homologou
  3 KB (381 words) - 15:33, 27 May 2022
• Deepvariant
  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generati
  3 KB (356 words) - 13:17, 16 April 2024
• Wgs
  ...rge in 2004 as the wgs-assembler under the GNU General Public License. The pipeline revised for 454 data was named CABOG (Miller 2008).
  3 KB (375 words) - 20:55, 12 August 2022
• PerM
  ...ormat and that output can be further processed by ComB, SAMtools, RseqFlow pipeline and the [[Galaxy]]. Check the [http://code.google.com/p/perm/wiki/Manual ma
  3 KB (396 words) - 17:40, 21 August 2022

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