Search results

• Amphora2
  An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
  3 KB (333 words) - 17:35, 10 June 2022
• AMOS
  ...so that new contributions can be easily inserted into an existing assembly pipeline. This modular design will foster the development of new assembly algorithms
  3 KB (344 words) - 12:41, 12 August 2022
• Talon
  A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification. Dana Wyman, Gabriela Balder
  3 KB (321 words) - 15:13, 23 September 2022
• ElPrep
  ...of the number of processing steps that need to be applied in a particular pipeline, greatly improving runtime performance.
  3 KB (345 words) - 21:20, 6 December 2019
• Pdb2pqr
  *PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Dolinsky TJ
  3 KB (336 words) - 17:51, 15 August 2022
• AutoDock-GPU
  included a batched ligand pipeline developed by Aaron Scheinberg from
  3 KB (332 words) - 15:25, 12 August 2022
• Seqmule
  ...ent, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file. SeqMule al
  3 KB (342 words) - 19:06, 15 September 2022
• Finder
  finder is a gene annotator pipeline which automates the process of
  3 KB (345 words) - 16:42, 15 August 2022
• WU BLAST
  ...st error checking identifies problems sooner; flexible identifiers improve pipeline design and management
  3 KB (356 words) - 17:44, 22 August 2022
• Hapdup
  HapDup (haplotype duplicator) is a pipeline to convert a haploid long read assembly into a dual diploid assembly. The r
  3 KB (324 words) - 21:07, 7 April 2022
• Haplomerger2
  HM2 is an easy-to-use automated pipeline for improving geneome assembly in the post-assembly stage. It consists of a
  3 KB (339 words) - 19:05, 12 August 2022
• Hapsembler
  The Hapsembler pipeline is described in contain three main stages:
  3 KB (332 words) - 18:15, 15 August 2022
• Meraculous
  ...mble human-sized genomes on commodity clusters in under a day. The process pipeline implements a highly transparent and portable model of job control and monit
  3 KB (354 words) - 18:36, 10 June 2022
• Rapidsai
  ...at integrates with a variety of machine learning algorithms for end-to-end pipeline accelerations without paying typical serialization costs. RAPIDS also inclu
  3 KB (348 words) - 21:29, 21 August 2022
• READemption
  READemption is a pipeline for the computational evaluation of RNA-Seq data. It was originally develop
  3 KB (352 words) - 17:58, 1 June 2022
• Nipype
  existing pipeline systems.
  3 KB (348 words) - 20:07, 12 August 2022
• Humann2
  HUMAnN 2.0 is a pipeline for efficiently and accurately profiling the presence/absence and abundance
  3 KB (348 words) - 22:26, 27 August 2020
• Aquamis
  AQUAMIS is a pipeline for routine assembly and quality assessment of microbial isolate sequencing
  3 KB (348 words) - 22:07, 20 October 2023
• PanX
  ...n-genome analysis, interactive visualization and exploration. The analysis pipeline is based on DIAMOND (Buchfink et al. 2015 Nature Methods), MCL and phylogen
  3 KB (346 words) - 21:22, 6 December 2019
• Biolite
  * A modular 'pipeline' framework with Python wrappers and workflows for commonly used NGS tools,
  3 KB (362 words) - 12:54, 15 August 2022

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