Trinity

Trinity is an application for de novo reconstruction of transcriptomes from RNA-Seq data. Its home page is at http://trinityrnaseq.sourceforge.net/.

Installation

Trinity contains three applications - Inchworm, Chrysalis, and Butterfly. They are meant to be installed "in-tree". To install, just download Trinity from their website, untar it, and type 'make'.

Testing

There are two tests which come with Trinity:

/apps/trinity/r20110519/sample_data/runMe.sh
/apps/trinity/r20110519/Butterfly/src/runExample.sh

The former tests the whole flow, and the latter tests Butterfly only.