Difference between revisions of "Talk:BioC Requirements Information Gathering"
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| − | = | + | =General requirements= |
| − | + | * The perceived direction of the discussions at the BioC Investor meetings as of now - early November - seems to give more and more priority to the storage as the primary need and the raw computing capacity and the memory configuration as a somewhat secondary although not unimportant consideration. So, we should split the gathering of usage information between these two large areas to be able to distil the most important conclusions more easily. | |
| − | + | '''Note:''' Please use <nowiki>~~~~</nowiki> - for tildas to mark your username and the date of the comment to allow some tracking of information, ideas and proposals. | |
| − | + | = Storage = | |
| + | '''List your estimates of your storage needs for the next 6, 12 and 18 months here. All labs investing over $3k are listed below alphabetically.''' | ||
| + | ==Baer Lab== | ||
| + | ==Barbazuk Lab== | ||
| + | ==Bloom Lab== | ||
| + | ==Brocchieri Lab== | ||
| + | ==ICBR== | ||
| + | ==Kirst Lab== | ||
| + | ==Kolaczkowski Lab== | ||
| + | ==Mai Lab== | ||
| + | ==McIntyre Lab== | ||
| + | ==Paine Lab== | ||
| + | ==Peter Lab== | ||
| + | ==Ponciano Lab== | ||
| + | ==Pulliam Lab== | ||
| + | ==Reed Lab== | ||
| + | ==Renne Lab== | ||
| + | ==Riva Lab == | ||
| + | ==Salemi Lab== | ||
| + | ==Soltis Lab== | ||
| + | ==Triplett Lab== | ||
| + | ==UFGI== | ||
| + | ==Smaller Investors== | ||
| + | Please feel free to add additional lab names. | ||
| − | == | + | = Memory = |
| + | ==Baer Lab== | ||
| + | ==Barbazuk Lab== | ||
| + | ==Bloom Lab== | ||
| + | ==Brocchieri Lab== | ||
| + | ==ICBR== | ||
| + | ==Kirst Lab== | ||
| + | ==Kolaczkowski Lab== | ||
| + | ==Mai Lab== | ||
| + | ==McIntyre Lab== | ||
| + | ==Paine Lab== | ||
| + | ==Peter Lab== | ||
| + | ==Ponciano Lab== | ||
| + | ==Pulliam Lab== | ||
| + | ==Reed Lab== | ||
| + | ==Renne Lab== | ||
| + | ==Riva Lab == | ||
| + | ==Salemi Lab== | ||
| + | ==Soltis Lab== | ||
| + | ==Triplett Lab== | ||
| + | ==UFGI== | ||
| + | ==Smaller Investors== | ||
| + | Please feel free to add additional lab names. | ||
| + | = CPU = | ||
| + | ==Baer Lab== | ||
| + | ==Barbazuk Lab== | ||
| + | ==Bloom Lab== | ||
| + | ==Brocchieri Lab== | ||
| + | ==ICBR== | ||
| + | ==Kirst Lab== | ||
| + | ==Kolaczkowski Lab== | ||
| + | ==Mai Lab== | ||
| + | ==McIntyre Lab== | ||
| + | ==Paine Lab== | ||
| + | ==Peter Lab== | ||
| + | ==Ponciano Lab== | ||
| + | ==Pulliam Lab== | ||
| + | ==Reed Lab== | ||
| + | ==Renne Lab== | ||
| + | ==Riva Lab == | ||
| + | ==Salemi Lab== | ||
| + | ==Soltis Lab== | ||
| + | ==Triplett Lab== | ||
| + | ==UFGI== | ||
| + | ==Smaller Investors== | ||
| + | Please feel free to add additional lab names. | ||
| + | |||
| + | = Job Duration= | ||
| + | ==Baer Lab== | ||
| + | ==Barbazuk Lab== | ||
| + | ==Bloom Lab== | ||
| + | ==Brocchieri Lab== | ||
| + | ==ICBR== | ||
| + | ==Kirst Lab== | ||
| + | ==Kolaczkowski Lab== | ||
| + | ==Mai Lab== | ||
| + | ==McIntyre Lab== | ||
| + | ==Paine Lab== | ||
| + | ==Peter Lab== | ||
| + | ==Ponciano Lab== | ||
| + | ==Pulliam Lab== | ||
| + | ==Reed Lab== | ||
| + | ==Renne Lab== | ||
| + | ==Riva Lab == | ||
| + | ==Salemi Lab== | ||
| + | ==Soltis Lab== | ||
| + | Please feel free to add additional lab names. | ||
| + | * [[User:Magitz|Magitz]] 09:37, 31 October 2011 (EDT) : | ||
A fair amount of the Soltis Lab usage of the cluster will be for phylogenetic analyses. Many of these last 1-2 weeks, with a few as long as a month. Being able to schedule longer jobs will be important. However, my sense is that things have improved from where we were a few years ago, in that we rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster or Fisher were | A fair amount of the Soltis Lab usage of the cluster will be for phylogenetic analyses. Many of these last 1-2 weeks, with a few as long as a month. Being able to schedule longer jobs will be important. However, my sense is that things have improved from where we were a few years ago, in that we rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster or Fisher were | ||
#forgotten about by the user who started them and no longer needed | #forgotten about by the user who started them and no longer needed | ||
#set up with unrealistic expectations (jobs on bootstrap replicate 3 after 30 days set to run for 1,000 replicates, etc) | #set up with unrealistic expectations (jobs on bootstrap replicate 3 after 30 days set to run for 1,000 replicates, etc) | ||
| − | #could have been set up in way to complete within a month | + | #could have been set up in way to complete within a month. |
| + | ==Triplett Lab== | ||
| + | ==UFGI== | ||
| + | ==Smaller Investors== | ||
Revision as of 21:40, 2 November 2011
General requirements
- The perceived direction of the discussions at the BioC Investor meetings as of now - early November - seems to give more and more priority to the storage as the primary need and the raw computing capacity and the memory configuration as a somewhat secondary although not unimportant consideration. So, we should split the gathering of usage information between these two large areas to be able to distil the most important conclusions more easily.
Note: Please use ~~~~ - for tildas to mark your username and the date of the comment to allow some tracking of information, ideas and proposals.
Storage
List your estimates of your storage needs for the next 6, 12 and 18 months here. All labs investing over $3k are listed below alphabetically.
Baer Lab
Barbazuk Lab
Bloom Lab
Brocchieri Lab
ICBR
Kirst Lab
Kolaczkowski Lab
Mai Lab
McIntyre Lab
Paine Lab
Peter Lab
Ponciano Lab
Pulliam Lab
Reed Lab
Renne Lab
Riva Lab
Salemi Lab
Soltis Lab
Triplett Lab
UFGI
Smaller Investors
Please feel free to add additional lab names.
Memory
Baer Lab
Barbazuk Lab
Bloom Lab
Brocchieri Lab
ICBR
Kirst Lab
Kolaczkowski Lab
Mai Lab
McIntyre Lab
Paine Lab
Peter Lab
Ponciano Lab
Pulliam Lab
Reed Lab
Renne Lab
Riva Lab
Salemi Lab
Soltis Lab
Triplett Lab
UFGI
Smaller Investors
Please feel free to add additional lab names.
CPU
Baer Lab
Barbazuk Lab
Bloom Lab
Brocchieri Lab
ICBR
Kirst Lab
Kolaczkowski Lab
Mai Lab
McIntyre Lab
Paine Lab
Peter Lab
Ponciano Lab
Pulliam Lab
Reed Lab
Renne Lab
Riva Lab
Salemi Lab
Soltis Lab
Triplett Lab
UFGI
Smaller Investors
Please feel free to add additional lab names.
Job Duration
Baer Lab
Barbazuk Lab
Bloom Lab
Brocchieri Lab
ICBR
Kirst Lab
Kolaczkowski Lab
Mai Lab
McIntyre Lab
Paine Lab
Peter Lab
Ponciano Lab
Pulliam Lab
Reed Lab
Renne Lab
Riva Lab
Salemi Lab
Soltis Lab
Please feel free to add additional lab names.
- Magitz 09:37, 31 October 2011 (EDT) :
A fair amount of the Soltis Lab usage of the cluster will be for phylogenetic analyses. Many of these last 1-2 weeks, with a few as long as a month. Being able to schedule longer jobs will be important. However, my sense is that things have improved from where we were a few years ago, in that we rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster or Fisher were
- forgotten about by the user who started them and no longer needed
- set up with unrealistic expectations (jobs on bootstrap replicate 3 after 30 days set to run for 1,000 replicates, etc)
- could have been set up in way to complete within a month.