Updating CryoSPARC

If you have a CryoSPARC instance running in PUBAPPS a representative from a group who requested access to the instance can update CryoSPARC when an update becomes available in the interface.

Note: use the correct group name instead of 'GROUP' below.

• Log into the webserver from HiPerGator

$ ssh cryosparc

Note: the above 'cryosparc' profile is configured for the group representative user(s).

• Run a manual database backup in addition to the nightly automated cryosparc database backups:

$ cryosparcm backup --dir=/blue/GROUP/apps/cryosparc/db_backups

• Change into the cryosparc_master directory

$ cd /privapps/GROUP/cryosparc/prod/cryosparc_master/

• Stop the cryosparc instance

$ systemctl --user stop cryosparc

• Update the master

$ cryosparcm update

• Copy the worker update bundle

$ cp cryosparc_worker.tar.gz cryosparc_worker/

• Update the worker

$ cryosparc_worker/bin/cryosparcw update

• Check if cryosparcm started automatically after update

$ cryosparcm status

if status is running then stop with cryosparcm and start with systemctl

$ cryosparcm stop

• Start cryosparc with SystemD

$systemctl --user start cryosparc

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