Difference between revisions of "DALIGNER"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|daligner}} |{{#vardefine:url|https://github.com/thegenemyer...")
 
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]
+
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|daligner}}
 
|{{#vardefine:app|daligner}}
Line 21: Line 21:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 14:28, 15 August 2022

Description

daligner website  

Fast and sensitive detection of all pairwise local alignments

Environment Modules

Run module spider daligner to find out what environment modules are available for this application.

System Variables

  • HPC_DALIGNER_DIR - installation directory