Difference between revisions of "Cutadapt"

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[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
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|{{#vardefine:app|cutadapt}}
 
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{{#if: {{#var: mod}}|==Execution Environment and Modules==
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==Environment Modules==
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{{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
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* HPC_CUTADAPT_BIN - executable directory
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==System Variables==
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==
 
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}}
 
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Latest revision as of 18:44, 12 August 2022

Description

cutadapt website  

cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read length of the sequencing machine is longer than the molecule that is sequenced, for example when sequencing microRNAs.

Environment Modules

Run module spider cutadapt to find out what environment modules are available for this application.

System Variables

  • HPC_CUTADAPT_DIR - installation directory




Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=Cutadapt&oldid=24775"