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| The following is a list of the installed software packages maintained at the UF HPC Center
| | #REDIRECT [[Applications]] |
| ==Software==
| |
| {| border="1"
| |
| ! Software !! Version !! Home Website
| |
| |-
| |
| | [[hypre]] || 2.0.0 || [http://www.llnl.gov/casc/hypre/software.html Lawrence Livermore National Labs]
| |
| |-
| |
| | [[GULP]] || 3.0.1 || [https://www.ivec.org/GULP/ www.ivec.org]
| |
| |-
| |
| | [[Gromacs]] || 3.3.1 || [http://www.gromacs.org/ www.gromacs.org]
| |
| |-
| |
| | [[Amber]] || 9 || [http://amber.scripps.edu/ amber.scripps.edu]
| |
| |-
| |
| | [[gaussian]] || 03 || [http://www.gaussian.com/ www.gaussian.com]
| |
| |-
| |
| | [[Abaqus]] || 6.6-1 || [http://www.abaqus.com/ www.abaqus.com]
| |
| |-
| |
| | [[Adina]] || 8.3 || [http://www.adina.com/ www.adina.com]
| |
| |-
| |
| | [[Ansys]] || 10.0 || [http://www.ansys.com/ www.ansys.com]
| |
| |-
| |
| | [[mpiBlast]] || 1.3.0 || [http://www.ncbi.nlm.nih.gov/ NCBI]
| |
| |-
| |
| | [[ccp4]] || 6.0.2 || [http://www.ccp4.ac.uk/main.html www.ccp4.ac.uk]
| |
| |-
| |
| | [[Ensight]] || 8.2 || [http://www.ensight.com/ www.ensight.com]
| |
| |-
| |
| | [[cnssolve]] || 1.1 || [http://cns.csb.yale.edu/v1.1/ cns.csb.yale.edu]
| |
| |-
| |
| | [[dlpoly]] || 3.0.2 || [http://www.cse.clrc.ac.uk/ccg/software/DL_POLY/index.shtml www.cse.clrc.ac.uk]
| |
| |-
| |
| | [[dock]] || 6.0 || [http://dock.compbio.ucsf.edu/ dock.compbio.ucsf.edu]
| |
| |-
| |
| | [[Eman]] || 1.8 || [http://blake.bcm.tmc.edu/eman/ blake.bcm.tms.edu]
| |
| |-
| |
| | [[PWscf]] || 3.0 || [http://www.pwscf.org/download.htm www.pwscf.org]
| |
| |-
| |
| | [[Fragstats]] || 2.0 || [http://www.umass.edu/landeco/research/fragstats/fragstats.html www.umass.edu]
| |
| |-
| |
| | [[FSL]] || 3.3 || [http://www.fmrib.ox.ac.uk/fsl/ www.fmrib.ox.ac.uk]
| |
| |-
| |
| | [[Geant]] || 4.8.2 || [http://geant4.web.cern.ch/geant4/ geant4.web.cern.ch]
| |
| |-
| |
| | [[meme]] || 3.0.13 || [http://meme.sdsc.edu/meme/intro.html meme.sdsc.edu]
| |
| |-
| |
| | [[metis]] || 4.0 || [http://glaros.dtc.umn.edu/gkhome/views/metis glaros.dtc.umn.edu]
| |
| |-
| |
| | [[NAMD]] || 2.6 || [http://www.ks.uiuc.edu/Research/namd/ www.ks.uiuc.edu]
| |
| |-
| |
| | [[R]] || 2.2.1 || [http://www.r-project.org www.r-project.org]
| |
| |-
| |
| | [[Rosetta]] || 2.1.1 || [https://www.rosettacommons.org/ www.rosettacommons.org]
| |
| |-
| |
| | [[Siesta]] || 2.0 || [http://www.uam.es/departamentos/ciencias/fismateriac/siesta/ www.uam.es]
| |
| |-
| |
| | [[VASP]] || 4.6.28 || [http://cms.mpi.univie.ac.at/vasp/ cms.mpi.univie.ac.at]
| |
| |}
| |
| | |
| ==Software Not Installed==
| |
| * [[Matlab]] - We do not have a license for this softare, but it is possible to export matlab programs into executable binaries using the matlab compiler, and then run those executables on the cluster.
| |