UFRC Help and Documentation

Welcome to the University of Florida Research Computing Help and Documentation site. The information here is focused on particular applications, services, and usage examples and complements more general policies and information found on our main web site. It is used for information that changes more frequently and might become quickly dated or incorrect on the web site. This site is edited by individual UFRC staff members. If you find inaccuracies, errors, or omissions on this site please let us know.

HiPerGator 2.0 Information

Getting Started

Getting Started Mailing Lists Events Calendar Training

SLURM Commands Non-Batch System Resources Interactive Development and Testing GUI Programs

Change your Password Submit a Support Request

Software and Libraries

Installed Software

Environment Modules System Available Compilers

GPU Access

Batch System

SLURM Commands Moab (PBS) to SLURM Command Reference Using Variables in SLURM SLURM Job Arrays

Account and QOS Limits Under SLURM GUI Partition Big Memory Partition

Annotated Job Script Walk-through Sample SLURM Scripts Example SLURM Script - Parallel Job Example SLURM Script - GPU Job

Connecting and Data Transfer

Samba Access Transfer Data

Globus

Using PuTTY for SSH GatorBox

Specific Research Areas

Biological Research Computing Bioinformatics Software

R (BioConductor)

Galaxy Genomics Framework

Blast Databases