View source for RADICAL

[[Category:Software]][[Category:Biology]][[Category:Genomics]]
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RADICAL stands for Random Addition Concatenation Analysis. It concatenates randomly selected gene partitions and builds phylogenetic trees (MP with PAUP*/ML with RAxML) to examine tree-to-tree agreement of the concatenation path. Also calculates ML support per node and partition. See Narechania et al. (2011 Genome Biol Evol).
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{{#if: {{#var: exe}}|==Additional Information==
The radical/0.2 code is preset for using 2 RAxML threads, so the batch job resource request must be in the form of "nodes=1:ppn=2". There is no PAUP option.
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{{#if: {{#var: citation}}|==Citation==
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