View source for PhyloTF2

[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Alignment]]
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|{{#vardefine:url|https://github.com/davidrasm/phyloTF2}}
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phyloTF2 is a package for efficient likelihood-based phylodynamic learning using birth-death-sampling models. phyloTensorFlow is built on top of TensorFlow 2 using the Keras API. Statistical inference or model training is performed using gradient descent algorithms such as ADAM to optimize the likelihood of a tree under a birth-death-sampling model. The fitness of any lineage in a phylogenetic tree can depend on reconstructed ancestral features (states). A fitness mapping function is used to translate a lineage’s ancestral features into expected fitness.

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