View source for MEGAN

[[Category:Software]][[Category:Biology]][[Category:NGS]]
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|{{#vardefine:app|megan}}
|{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}
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MEGAN6 (MEtaGenome ANalyzer) is a comprehensive toolbox for interactively analyzing microbiome data. All the interactive tools
you need in one application.

* Taxonomic analysis using the NCBI taxonomy or a customized taxonomy such as SILVA
* Functional analysis using InterPro2GO, SEED, eggNOG or KEGG
* Bar charts, word clouds, and many other charts
* PCoA, clustering and networks
* Supports metadata
* MEGAN parses many different types of input

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==Environment Modules==
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
==System Variables==
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
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{{#if: {{#var: conf}}|==Configuration==
See the [[{{PAGENAME}}_Configuration]] page for {{#var: app}} configuration details.
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{{#if: {{#var: exe}}|==Additional Information==

To run the MEGAN6 GUI to process your data, launch an interactive session in Open on Demand (or use your GPU allocation) and type the following command:

$ module load megan

$ MEGAN

Usage Manual for MEGAN6:
https://software-ab.cs.uni-tuebingen.de/download/megan6/manual.pdf

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{{#if: {{#var: pbs}}|==PBS Script Examples==
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.
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{{#if: {{#var: policy}}|==Usage Policy==

WRITE USAGE POLICY HERE (Licensing, usage, access).

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{{#if: {{#var: testing}}|==Performance==

WRITE_PERFORMANCE_TESTING_RESULTS_HERE

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{{#if: {{#var: faq}}|==FAQ==
*'''Q:''' **'''A:'''|}}
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{{#if: {{#var: citation}}|==Citation==
If you publish research that uses {{#var:app}} you have to cite it as follows:

WRITE_CITATION_HERE

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{{#if: {{#var: installation}}|==Installation==
See the [[{{PAGENAME}}_Install]] page for {{#var: app}} installation notes.|}}
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