View source for AfterQC

[[Category:Software]][[Category:Phylogenetics]]
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|{{#vardefine:url|https://github.com/OpenGene/AfterQC}}
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AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.
Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other Illumina 1.8 or newer formats

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{{#if: {{#var: policy}}|==Usage Policy==

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{{#if: {{#var: citation}}|==Citation==
If you publish research that uses {{#var:app}} you have to cite it as follows:

[https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1469-3 Shifu Chen, Tanxiao Huang, Yanqing Zhou, Yue Han, Mingyan Xu and Jia Gu. AfterQC: automatic filtering, trimming, error removing and quality control for fastq data. BMC Bioinformatics 2017 18(Suppl 3):80]

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