View source for Ngs-bits

[[Category:Software]][[Category:Biology]][[Category:Sequencing]]
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|{{#vardefine:url|https://github.com/imgag/ngs-bits}}
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Short-read sequencing tools.

Main tools

* SeqPurge - A highly-sensitive adapter trimmer for paired-end short-read data (paper, poster from ECCB 2016 with more recent benchmarks).
* SampleCorrelation - Calculates the variant overlap and correlation of two VCF/BAM files.
* SampleGender - Determines sample gender based on a BAM file.
* PERsim - Paired-end read simulator for Illumina reads.
* CnvHunter - CNV detection from targeted resequencing data using non-matched control samples.

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