TreeFix

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Description

treefix website  

TreeFix: statistically informed gene tree error correction using species trees .

Required Modules

Serial

  • treefix

System Variables

  • HPC_TREEFIX_DIR
  • HPC_TREEFIX_BIN




Citation

If you publish research that uses treefix you have to cite it as follows: TreeFix: statistically informed gene tree error correction using species trees. Yi-Chieh Wu, Matthew D. Rasmussen, Mukul S. Bansal, and Manolis Kellis. Systematic Biology 2012. doi: /10.1093/sysbio/sys076.

Address correspondence to: Yi-Chieh Wu (yjw at mit.edu) and Manolis Kellis (manoli at mit.edu).

Additionally, if you use the default module for computing the test statistic, please cite Alexandros Stamatakis. RAxML-VI-HPC: Maximum Likelihood-based Phylogenetic Analyses with Thousands of Taxa and Mixed Models. Bioinformatics 22 (21):2688-2690, 2006.


Validation

  • Validated 4/5/2018