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• Matlab GUI Example
  ==Launch Wrapper== Use the MATLAB launch wrapper provided by UFRC to start your MATLAB GUI session:
  3 KB (375 words) - 21:32, 24 October 2022
• Pyweka
  |{{#vardefine:url|https://fracpete.github.io/python-weka-wrapper/}} python-weka-wrapper provides a thin wrapper around the basic (non-GUI) functionality of Weka (some plots are available
  2 KB (265 words) - 17:35, 1 June 2022
• UFRC environment module
  | mac2unix || a wrapper of dos2unix preset for conversion from macos to linux text file line ending | unix2dos || a wrapper of dos2unix preset for conversion from linux to windows text file line endi
  4 KB (606 words) - 15:57, 23 August 2023
• GATK
  We provide a wrapper script GenomeAnalysisTK for gatk module versions before 4.0 that is equival If you do not use the wrapper you '''must''' make sure to create and use a local ''TMPDIR'' in your /blue
  4 KB (540 words) - 16:53, 15 August 2022
• Varnorm
  Normalize variants in VCF file using left-aligned normalization. Basically a wrapper around Counsyl's hgvs package.
  2 KB (251 words) - 17:23, 22 August 2022
• Cyvcf2
  It is a cython wrapper for htslib developed in the Quinlan lab.
  2 KB (260 words) - 14:47, 28 July 2023
• ImageJ
  ImageJ can be run via the ''imagej'' wrapper script.
  2 KB (268 words) - 20:03, 10 June 2022
• Mfannot
  ...gram for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools.
  2 KB (279 words) - 21:21, 6 December 2019
• PCRE
  ...and semantics as Perl 5. PCRE has its own native API, as well as a set of wrapper functions that correspond to the POSIX regular expression API. The PCRE lib
  3 KB (307 words) - 12:10, 26 August 2022
• Synima
  ...hainer. OrthoMCL, Orthofinder and DAGchainer are bundled with Synima, with wrapper scripts provided in /util/. Several scripts launch several jobs that can be
  3 KB (313 words) - 20:34, 27 May 2022
• Pbmm2
  pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and outpu
  3 KB (303 words) - 20:08, 31 May 2022
• CryptoMiniSat
  ...icient system, with assumptions and multiple solve() calls. A C compatible wrapper is also provided. The python interface provides a high-level yet efficient
  3 KB (325 words) - 14:13, 15 August 2022
• Sciann
  title={SciANN: A Keras/TensorFlow wrapper for scientific computations and physics-informed deep learning using artifi
  3 KB (307 words) - 20:09, 3 August 2023
• Freesurfer
  ...a Singularity container. To run any executable use the 'launch_freesurfer' wrapper after loading the module.
  3 KB (323 words) - 20:09, 12 August 2022
• Structure threader
  A wrapper program to parallelize the runs of Structure, fastStructure, MavericK and A
  3 KB (342 words) - 18:56, 3 June 2022
• OrthoMCL
  A wrapper script -- '<code>orthomcl_wrapper_SQLITE</code>' -- that creates a suitable The wrapper script writes a '<code>run_split_blast_array.sh</code>' script that can be
  5 KB (748 words) - 22:40, 28 January 2024
• Tecplot 360 EX
  ...ls. To run Tecplot under Xpra use the tecplot module and tecplot_gui shell wrapper. Example session with the default resource request:
  3 KB (337 words) - 14:56, 19 August 2022
• Finesse
  ...ferred method of using Finesse is from Jupyter notebooks, using its Python wrapper Pykat.
  3 KB (347 words) - 00:01, 9 July 2020
• DDocent
  This script serves as an interactive bash wrapper to QC, assemble, map, and call SNPs from double digest RAD data. It is desi
  2 KB (311 words) - 14:29, 15 August 2022
• VarScan
  or use the wrapper script we provide as
  3 KB (324 words) - 20:54, 12 August 2022

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