Search results

[[Category:Software]][[Category:Annotation]][[Category:Biology]] Easy-to-use pipeline for the comprehensive metabolic annotation of microbial genomes.

Bakta is a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides ...nnotation of bacterial genomes via alignment-free sequence identification. Microbial Genomics, 7(11).]

VIBRANT is a tool for automated recovery and annotation of bacterial and archaeal viruses, determination of genome completeness, an ...& Anantharaman, K. VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences.

...assemblies exploiting protein sequence-based replicon distribution scores. Microbial Genomics, 95, 295. https://doi.org/10.1099/mgen.0.000398</code> .... P., Redondo-Salvo S., Vielva L., de la Cruz F. (2020) MOBscan: Automated Annotation of MOB Relaxases. Methods in Molecular Biology, https://doi.org/10.1007/978

...he inclusion of HMM information guides the assembly, with concomitant gene annotation.

[[Category:Software]][[Category:Biology]][[Category:Annotation]] Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses. Glimmer (Gen