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• Whiteboxtools
  ...n package; instead it is meant to serve as an analytical backend for other data visualization software, mainly GIS.
  3 KB (408 words) - 17:43, 22 August 2022
• METAL
  ...no loss of efficiency compared to analysis of a combined dataset including data from all individual studies. * HPC_{{uc:{{#var:app}}}}_EX - example data directory
  3 KB (426 words) - 19:27, 18 August 2022
• ProbABEL
  Genome-wide association analysis of imputed data. ...t for association in samples with differential relationships, facilitating analysis in family-based studies, studies performed in human genetically isolated po
  3 KB (371 words) - 19:35, 21 August 2022
• MAGMA-GWAS
  ...genotype data as well as summary SNP p-values from a previous GWAS or meta-analysis.
  2 KB (273 words) - 19:35, 23 February 2021
• SOLAR
  ...al features include functionality for mega and meta-genetic analyses where data from diverse cohorts can be pooled to improve statistical significance.
  3 KB (328 words) - 21:24, 6 December 2019
• Ydata-profiling
  ...iling delivers an extended analysis of a DataFrame while allowing the data analysis to be exported in different formats such as html and json.
  2 KB (280 words) - 19:05, 1 December 2023
• Mvftools
  ...ogenetic and population genetic analyses, and small file sizes that enable data sharing and distribution. ...lore.ieee.org/document/7360178 Pease JB and BK Rosenzweig. 2018. "Encoding Data Using Biological Principles: the Multisample Variant Format for Phylogenomi
  3 KB (370 words) - 13:58, 30 April 2020
• Bxh xcede tools
  ...s of the fBIRN QA procedures and are also distributed as part of the fBIRN Data Upload Scripts.
  2 KB (291 words) - 18:22, 12 August 2022
• GUAVA
  ...we believe that GUAVA is a powerful and time saving tool for ATAC-seq data analysis. The GUAVA setup contains a script to configure and install dependencies wh
  3 KB (351 words) - 21:20, 6 December 2019
• MetaWRAP
  ...m, which means you can use only the modules you are interested in for your data. ...ation: MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis. If certain software wrapped into metaWRAP were integral to your investigat
  3 KB (412 words) - 22:31, 8 September 2020
• Ferret
  ...gory: Geospatial]][[Category:Climate]][[Category:Visualization]][[Category:Data Science]] ...riables may be defined interactively as mathematical expressions involving data set variables. Calculations may be applied over arbitrarily shaped regions.
  3 KB (359 words) - 20:26, 24 August 2022
• AltAnalyze
  ...icing graph). AltAnalyze is compatible with various data inputs for RNASeq data (FASTQ, BAM, BED), microarray platforms (Gene 1.0, Exon 1.0, junction and 3
  3 KB (398 words) - 19:14, 10 June 2022
• ANGSD
  ...is on called genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes. ...r manipulating '.bam' files, but solely a tool to perform various kinds of analysis. We recommend the excellent program SAMtools for outputting and modifying b
  3 KB (355 words) - 12:42, 12 August 2022
• TASSEL
  TASSEL stands for Trait Analysis by aSSociation, Evolution and Linkage. Its primary function continues to be ...rincipal component analysis, cluster analysis, missing data imputation and data visualization.  TASSEL development has been led by a group focused on maiz
  3 KB (386 words) - 16:13, 22 August 2022
• Mailing Lists
  ...o this list. Discussion about any aspects of biological computing and data analysis is also welcome.
  778 bytes (110 words) - 20:34, 2 August 2021
• BatMeth2
  In order to complete the DNA methylation data analysis more conveniently, for DNA methylation analysis. During the execution of BatMeth2 Tool, an
  3 KB (324 words) - 18:57, 17 September 2021
• VAMPIR
  [[Category:Software]][[Category:Performance Analysis]] ...able fast and interactive rendering of very complex performance monitoring data.
  3 KB (321 words) - 17:22, 22 August 2022
• ROOT
  [[Category:Software]][[Category:Data Science]] ...al parallel processing framework, PROOF, that can considerably speed up an analysis.
  3 KB (358 words) - 16:48, 21 August 2022
• SplAdder
  ...he alignment data. The quantified events can then be used for differential analysis.
  3 KB (304 words) - 15:50, 22 August 2022
• S.A.G.E
  S.A.G.E. (Statistical Analysis for Genetic Epidemiology) ...rograms for use in the genetic analysis of family, pedigree and individual data.
  2 KB (277 words) - 15:17, 10 September 2021

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