Search results
Jump to navigation
Jump to search
- [[Category:Software]][[Category:Sequencing]][[Category:Biology]][[Category:NGS]] ...e patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.3 KB (299 words) - 21:28, 16 September 2022
- This module allows you to use SIPeS. With the advent of sequencing sequencing (ChIP-Seq) is becoming a powerful tool to study protein-DNA3 KB (327 words) - 20:41, 12 August 2022
- ...g nanopore sequencing. For microbiomes, nanodisco also supports the use of DNA methylation patterns as natural epigenetic barcodes to facilitate high reso ...tiple types of DNA methylation from bacteria and microbiome using nanopore sequencing. Nat Methods (2021). doi:10.1038/s41592-021-01109-3]3 KB (326 words) - 14:37, 27 August 2021
- |{{#vardefine:app|cellranger-dna}} ...genomics.com/single-cell-dna/software/pipelines/latest/what-is-cell-ranger-dna}}2 KB (263 words) - 13:25, 15 August 2022
- ...e time required by BLASTX. The PAUDA approach makes it possible to process DNA reads at a rate of millions of reads per CPU hour. PAUDA is 10,000 times fa3 KB (367 words) - 17:03, 21 August 2022
- ...matics tools in order to extract target sequences from high-throughput DNA sequencing reads. ...racting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment. Applications in Plant Sciences, 4(7), 1600013 KB (349 words) - 18:36, 10 June 2022
- ...ng platforms. The method requires each pool to be sequenced using the same sequencing platform.3 KB (342 words) - 21:01, 6 December 2019
- [[Category:Sequencing]] ...for DNA sequences. It uses Frequency Chaos Game Representations of primary DNA sequences to generate mimic sequences to self-learn data patterns though th3 KB (301 words) - 14:35, 15 August 2022
- [[Category:Software]][[Category:biology]][[Category:Sequencing]] ...ater flexibility or to work with FASTQ or FASTA files generated from other sequencing platforms (Roche 454, Ion Torrent, etc).4 KB (501 words) - 18:55, 6 June 2022
- ..., Hyb-Seq (Target Enrichment + Genome Skimming), RNA-seq, and Whole Genome Sequencing. The toolkit will also include a module for the design of probes for target3 KB (321 words) - 16:36, 16 November 2022
- ...nd from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. Harris, R.S. (2007) Improved pairwise alignment of genomic DNA. Ph.D. Thesis, The Pennsylvania State University.2 KB (284 words) - 19:30, 12 August 2022
- SMALT aligns DNA sequencing reads with a reference genome. Supported Sequencing Platforms3 KB (342 words) - 17:24, 3 June 2022
- [[Category:Software]][[Category:Sequencing]] finds DNA motifs of unknown length and complicated structure, such as3 KB (299 words) - 22:41, 21 August 2022
- ...ider purpose requiring to identify map NGS datasets consisting of a mix of DNA sequences on multiple references. It combine several features such as refer3 KB (309 words) - 20:40, 10 June 2022
- [[Category:Sequencing]] DNA sequence reads, designed to just work with excellent speed and3 KB (317 words) - 20:03, 8 March 2022
- ...until convergence. Since it was originally designed to be used on ancient DNA, it supports a position specific substitution matrix, which improves both a3 KB (347 words) - 19:52, 12 August 2022
- ..., e.g., Illumina or Roche/454, from whole-genome sequencing of metagenomic DNA. Reads are directly assigned to taxa using the NCBI taxonomy and a referenc2 KB (283 words) - 21:21, 6 December 2019
- SHort-read Assembler based on Robust Contig-extension for Genomic Sequencing. ...fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Research 2007 17: 1697-1706.3 KB (313 words) - 22:42, 21 August 2022
- [[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]] ...d (ONT or PacBio) or short-read (Illumina) whole genome sequencing data of DNA extracted from wastewater. It was developed for SARS-CoV2 and its variants.2 KB (281 words) - 13:16, 15 August 2022
- [[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] * Align billions of DNA reads to a genome3 KB (342 words) - 19:29, 12 August 2022