Spades

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Description

spades website  

SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies.

Required Modules

Serial

  • spades

System Variables

  • HPC_SPADES_DIR

Additional Information

Spades Manual

You can create a personal phyluce config in ~/.phyluce.conf. It's mostly used to set trinity or spades memory with something like

[trinity]
max_memory:8G
kmer_coverage:2

[spades]
max_memory:6G
cov_cutoff:5




Validation

  • Validated 4/5/2018