ShoRAH

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Description

shorah website  

ShoRAH is an open source project for the analysis of next generation sequencing data. It is designed to analyse genetically heterogeneous samples. Its tools are written in different programming languages and provide error correction, haplotype reconstruction and estimation of the frequency of the different genetic variants present in a mixed sample.

Required Modules

Serial

  • shorah

System Variables

  • HPC_SHORAH_DIR - installation directory




Citation

If you publish research that uses shorah you have to cite it as follows:

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data Osvaldo Zagordi12*, Arnab Bhattacharya1, Nicholas Eriksson3 and Niko Beerenwinkel12


Validation

  • Validated 4/5/2018