SCRATCH1D

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Description

scratch1d website  

SCRATCH-1D is a suite of one-dimensional predictors included in the long-established and widely used SCRATCH suite of predictors developed by the Institute for Genomics and Bioinformatics (IGB) of the University of California, Irvine (UCI) : http://scratch.proteomics.ics.uci.edu.

SCRATCH-1D currently includes the following predictors and tools:

- SSpro Release 5.1 Protein secondary structure prediction (3-class)
- SSpro8 Release 5.1 Protein secondary structure prediction (8-class)
- ACCpro Release 5.1 Protein relative solvent accessibility prediction (at the 25% threshold)
- ACCpro20 Release 5.1 Protein relative solvent accessibility prediction (thresholds 0% to 95%)
- PROFILpro Release 1.0 Protein evolutionary information / sequence profiles for 1D predictors
- HOMOLpro Release 1.0 Homology-based secondary structure & solvent accessibility prediction
- 1D-BRNN Release 3.2 One-dimensional bidirectional recurrent neural networks

Required Modules

Serial

  • scratch1d - installation directory

System Variables

  • HPC_SCRATCH1D_DIR - installation directory





Validation

  • Validated 4/5/2018