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phylophlan website  

PhyloPhlAn is a computational pipeline for reconstructing highly accurate and resolved phylogenetic trees based on whole-genome sequence information. The pipeline is scalable to thousands of genomes and uses the most conserved 400 proteins for extracting the phylogenetic signal. PhyloPhlAn also

Environment Modules

Run module spider phylophlan to find out what environment modules are available for this application.

System Variables

  • HPC_PHYLOPHLAN_DIR - installation directory
  • HPC_PHYLOPHLAN_BIN - executable directory


If you publish research that uses phylophlan you have to cite it as follows:

Nicola Segata, Daniela Börnigen, Xochitl C. Morgan, and Curtis Huttenhower. Nature Communications 4, 2013