NgsTools

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Description

ngstools website  

ngsTools is a collection of programs for population genetics analyses from NGS data, taking into account its statistical uncertainty. The methods implemented in these programs do not rely on SNP or genotype calling, and are particularly suitable for low sequencing depth data.

Required Modules

Serial

  • ngstools

System Variables

  • HPC_NGSTOOLS_DIR - installation directory

Additional Information

List of tools included in the module:

  • ngsSim
  • ngsF
  • ngsDist
  • ngsUtils
  • ngsPopGen



Citation

If you publish research that uses ngstools you have to cite it as follows:

https://github.com/mfumagalli/ngsTools#citation