Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. Migrate uses maximum likelihood or Bayesian inference to jointly estimate all parameters. It can use the following data types:
- Sequence data using Felsenstein's 84 model with or without site rate variation,
- Single nucleotide polymorphism data (sequence-like data input, HAPMAP-like data input)
- Microsatellite data using a stepwise mutation model or a brownian motion mutation model (using the repeatlength input format or the fragment-length input format),
- Electrophoretic data using an 'infinite' allele model.
Serial and Threaded
migrate-n and migrate-n-threaded binaries will be made available.
The minimal command is "migrate-n parmfile -nomenu"
Run it with "mpiexec migrate-n-mpi parmfile -nomenu"
- HPC_MIGRATEN_DIR - installation directory
- HPC_MIGRATEN_BIN - executable directory
A manual page is available. Run man migrate to view it after loading the appropriate module.
Full manual is available from the Migrate-n website.
Job Script Examples
See the Migrate-n_Job_Scripts page for migraten Job script examples.