Meme

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Description

meme website  

The MEME Suite allows you to:

  • discover motifs using MEME, DREME (DNA only) or GLAM2 on groups of related DNA or protein sequences,
  • search sequence databases with motifs using MAST, FIMO, MCAST or GLAM2SCAN,
  • compare a motif to all motifs in a database of motifs,
  • associate motifs with Gene Ontology terms via their putative target genes, and
  • analyse motif enrichment using SpaMo or CentriMo.

Required Modules

modules documentation

Serial

  • meme

Parallel (OpenMPI)

  • gcc/5.2.0
  • openmpi/1.10.2
  • meme

System Variables

  • HPC_MEME_DIR - installation directory
  • HPC_MEME_BIN - executable directory