LORMA

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Description

lorma website  

LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines.

Environment Modules

Run module spider lorma to find out what environment modules are available for this application.

System Variables

  • HPC_LORMA_DIR - installation directory

Additional Information

LoRMA needs to be launched for access to LoRMA and lordec binaries. Run the programs listed below with

module load lorma
launch_lorma <executable> <arguments>

where executables include

h5dump
lordec-build-SR-graph
lordec-correct
lordec-stat
lordec-trim
lordec-trim-split
LoRMA
lorma.sh



Citation

If you publish research that uses lorma you have to cite it as follows:

L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016.