InterProScan

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Description

iprscan website  

This interproscan software allows you to query your sequence against the InterPro databases.

Required Modules

modules documentation

Serial

  • iprscan

System Variables

  • HPC_IPRSCAN_DIR - installation directory

How To Run

Interproscan 5 series is run differently from the "4.x" series. See https://code.google.com/p/interproscan/wiki/i5RC6HowToRun for details or load the module and run "interproscan.sh". To set the amount of memory Interproscan can use set the "_JAVA_OPTIONS" variable to a value different from the default 2048M, e.g. '$ export _JAVA_OPTIONS="-Xmx8192M"'