The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program.
- HPC_IBDNE_DIR - installation directory
IBDseq is part of IBDNe.
If you publish research that uses ibdne you have to cite it as follows:
S R Browning and B L Browning (2015) Accurate non-parametric estimation of recent effective population size from segments of identity by descent. American Journal of Human Genetics. In Press. doi:10.1016/j.ajhg.2015.07.012