HiCAssembler

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Description

hicassembler website  

Hi-C scaffolding tool to assemble contigs/scaffolds into complete chromosomes


Environment Modules

Run module spider hicassembler to find out what environment modules are available for this application.

System Variables

  • HPC_HICASSEMBLER_DIR - installation directory
  • HPC_HICASSEMBLER_BIN - executable directory




Citation

If you publish research that uses hicassembler you have to cite it as follows:

Gina Renschler, Gautier Richard, Claudia Isabelle Keller Valsecchi, Sarah Toscano, Laura Arrigoni, Fidel Ramirez, Asifa Akhtar. "Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling", Genes & Development (2019)