Hi-C scaffolding tool to assemble contigs/scaffolds into complete chromosomes
module spider hicassembler to find out what environment modules are available for this application.
- HPC_HICASSEMBLER_DIR - installation directory
- HPC_HICASSEMBLER_BIN - executable directory
If you publish research that uses hicassembler you have to cite it as follows:
Gina Renschler, Gautier Richard, Claudia Isabelle Keller Valsecchi, Sarah Toscano, Laura Arrigoni, Fidel Ramirez, Asifa Akhtar. "Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling", Genes & Development (2019)