GraphMap
Description
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data. It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a significant improvement over the state-of-the-art for PacBio read mappers.
Required Modules
Serial
- gcc/5.2.0
- graphmap
System Variables
- HPC_GRAPHMAP_DIR - installation directory
Citation
If you publish research that uses graphmap you have to cite it as follows:
This work was supported by the IMaGIN platform (project No. 102 101 0025), through a grant from the Science and Engineering Research Council, funding to the Genome Institute of Singapore from the Agency for Science, Technology and Research (A*STAR), Singapore, and funding from the Croatian Science Foundation (Project no. UIP-11-2013-7353 - Algorithms for Genome Sequence Analysis).
