From the website: A family of gene prediction programs developed at Georgia Institute of Technology, Atlanta, Georgia, USA.
For bacterial and archaeal gene prediction it's recommended to use a parallel combination of GeneMark-P* and GeneMark.hmm-P with pre-computed models. A novel genome can be analyzed by the self-training program GeneMarkS* (aka GeneMark.hmm-PS).
Metagenomic sequences can be analyzed by the MetaGeneMark program with updated heuristic models.
- HPC__DIR - installation directory
- HPC_GENEMARK_DIR - directory under which all genemark applicatoins are located.
- Validated 4/5/2018