GET HOMOLOGUES

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Description

GET_HOMOLOGUES website website  

An open-source software package that builds on popular orthology-calling approaches making highly customizable and detailed pangenome analyses of microorganisms accessible to nonbioinformaticians. GET_HOMOLOGUES can cluster homologous gene families using the bidirectional best-hit, COGtriangles, or OrthoMCL clustering algorithms. Clustering stringency can be adjusted by scanning the domain composition of proteins using the HMMER3 package, by imposing desired pairwise alignment coverage cutoffs, or by selecting only syntenic genes.

Required Modules

  • get_homologues

System Variables

  • HPC_GET_HOMOLOGUES WEBSITE_DIR - installation directory





Validation

  • Validate 4/5/2018