FAST-iCLIP

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Description

fast-iclip website  

Fully Automated and Standardized iCLIP (FAST-iCLIP) is a fully automated tool to process iCLIP data. This package contains two main sets of tools: an executable called fasticlip to run iCLIP on human and mouse data, and several iPython notebooks to process iCLIP data from viral genomes.

Required Modules

Serial

  • fast-iclip

System Variables

  • HPC_FAST-ICLIP_DIR - installation directory




Citation

If you publish research that uses fast-iclip you have to cite it as follows:

Flynn RA, Martin L, Spitale RC, Do BT, Sagan SM, Zarnegar B, Qu K, Khavari PA, Quake SR, Sarnow P, Chang HY (2014). Dissecting non-coding and pathogen RNA-protein interactomes. RNA 21:1, 1-9. doi:10.1261/rna.047803.114