Bcbio-nextgen

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Description

bcbio-nextgen website  

bcbio-nextgen - is a python toolkit providing best-practice pipelines for fully automated high throughput sequencing analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The goal is to provide a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Required Modules

Serial

  • gcc/5.2.0
  • bcbio-nextgen/0.9.9

System Variables

  • HPC_BCBIO-NEXTGEN_DIR - installation directory