Nanocompore

From UFRC
Revision as of 20:48, 10 May 2024 by Richs (talk | contribs) (Created page with "Category:SoftwareCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Nanocompore}} |{{#vardefine:url|https://github.com/tleonardi/nanocompore/tree/mast...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

Nanocompore website  

Nanocompore identifies differences in ONT nanopore sequencing raw signal corresponding to RNA modifications by comparing 2 samples

Environment Modules

Run module spider Nanocompore to find out what environment modules are available for this application.

System Variables

  • HPC_NANOCOMPORE_DIR - installation directory
  • HPC_NANOCOMPORE_BIN - executable directory




Citation

If you publish research that uses Nanocompore you have to cite it as follows:

Adrien Leger, Paulo P. Amaral, Luca Pandolfini, Charlotte Capitanchik, Federica Capraro, Isaia Barbieri, Valentina Migliori, Nicholas M. Luscombe, Anton J Enright, Konstantinos Tzelepis, Jernej Ule, Tomas Fitzgerald, Ewan Birney, Tommaso Leonardi, Tony Kouzarides, RNA modifications detection by comparative Nanopore direct RNA sequencing, bioRxiv 843136; doi: https://doi.org/10.1101/843136