Macrel

From UFRC
Revision as of 17:45, 10 May 2024 by Richs (talk | contribs) (Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|macrel}} |{{#vardefine:url|https://macrel.readthedocs.io/en/l...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

macrel website  

Macrel: (Meta)genomic AMP Classification and Retrieval is a pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.


Environment Modules

Run module spider macrel to find out what environment modules are available for this application.

System Variables

  • HPC_MACREL_DIR - installation directory
  • HPC_MACREL_BIN - executable directory




Citation

If you publish research that uses macrel you have to cite it as follows:

Santos-Júnior CD, Pan S, Zhao X, Coelho LP. 2020. Macrel: antimicrobial peptide screening in genomes and metagenomes. PeerJ 8:e10555. DOI:10.7717/peerj.10555


Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=Macrel&oldid=28642"